uORF-Tools
latest
Documentation
uORF-Tools
Examples
Example workflow
Preprocessing workflow
uORF-Tools
Docs
»
uORF-Tools
Edit on GitHub
uORF-Tools
ΒΆ
Documentation
uORF-Tools
Introduction
Program flowchart
Directory table
Input/Output Files
uORFs_regulation.tsv
Tool Parameters
Requirements
Tools
miniconda3
snakemake
uORF-Tools
Input files
genome.fa and annotation.gtf
input .bam files
Sample sheet and configuration file
cluster.yaml
Example-workflow
Preprocessing-workflow
References
Examples
Example workflow
Setup
Retrieve and prepare input files
Annotation and genome files
.bam files
Sample sheet and configuration file
Running the workflow
Run the workflow locally
Run Snakemake in a cluster environment
Example: Run Snakemake in a cluster environment
Report
References
Preprocessing workflow
Setup
Retrieve and prepare input files
Annotation and genome files
Fastq files
European Nucleotide Archive (ENA)
Sample sheet and configuration file
Running the workflow
Information about processing parameters
Run the workflow locally
Run Snakemake in a cluster environment
Example: Run Snakemake in a cluster environment
Read the Docs
v: latest
Versions
latest
stable
v1.0.1
Downloads
pdf
html
epub
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.